Recent Scientific Publications

As of April 29, 2024

Arkhipova, I., &听Yushenova, I.听(2023). To be mobile or not: The variety of reverse transcriptases and their recruitment by host genomes.听袘懈芯褏懈屑懈褟,听88(11), 2127鈥2137.

Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Bj枚rk, R. G., B枚hner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N., Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guomundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J.-S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jonsdottir, I. S., Juhanson, J., Jung, J. Y., Kaarlejarvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, A., Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Oskarsson, H., Parker, T. C., Pedersen, E. P., Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, R., Rodenhizer, H., Ryde, I., Schmidt, N. M., Schuur, E. A. G., Sjogersten, S., Stark, S., Strack, M.,听Tang, J., Tolvanen, A., Topper, J. P., Vaisanen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylanne, H., Bjorkman, M. P., Sarneel, J. M., & Dorrepaal, E. (2024). Environmental drivers of increased ecosystem respiration in a warming tundra.听Nature.

脕lvarez-Campos, P., Garc铆a-Castro, H., Emili, E., P茅rez-Posada, A., del Olmo, I., Peron, S., Salamanca-D铆az, D. A., Mason, V.,听Metzger, B., Bely, A. E., Kenny, N. J.,听脰zpolat, B. D., & Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins.听Nature Communications,听15, 3194.

Mantica, F., I帽iguez, L. P., Marquez, Y., Permanyer, J., Torres-Mendez, A., Cruz, J., Franch-Marro, X., Tulenko, F., Burguera, D., Bertrand, S., Doyle, T., Nouzova, M., Currie, P. D., Noriega, F. G., Escriva, H., Arnone, M. I.,听Albertin, C. B., Wotton, K. R., Almudi, I., Martin, D., & Irimia, M. (2024). Evolution of tissue-specific expression of ancestral genes across vertebrates and insects.听Nature Ecology & Evolution.

O鈥橲hea, R., Capuzzo, E., Hemming, V.,听Grebe, G., Stafford, R., van den Burg, S. W. K., Wood, D., Watson, G., Wells, V., Johnson, T., Erbs, S., W. van Hal, J., Binnerts, B., Collins, A. M., & Howe, C. (2024). Managing offshore multi-use settings: Use of conceptual mapping to reduce uncertainty of co-locating seaweed aquaculture and wind farms.听Journal of Environmental Management,听358, 120696.

Petrova, K., Tretiakov, M., Kotov, A., Monsoro-Burq, A. H., &听Peshkin, L.听(2024). A new atlas to study embryonic cell types in Xenopus.听Developmental Biology.

Liu, X. J. A., Han, S., Frey, S. D.,听Melillo, J. M., Zhou, J., & DeAngelis, K. M. (2024). Microbial responses to long-term warming differ across soil microenvironments.听ISME Communications, ycae051.

Harbeitner, R. C.,听Wittmers, F., Yung, C. C. M.,听Eckmann, C. A., Hehenberger, E., Blum, M., Needham, D. M., &听Worden, A. Z.听(2024). Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions.听PLOS ONE,听19(4), e0298139.

Roberson, L.,听Grebe, G., Arzeno-Soltero, I., Bailey, D., Chan, S., Davis, K., Goudey, C., Kite-Powell, H., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Rollano, F., Saenz, B., Van Cise, A., Waters, T., Yang, Z., & Yarish, C.听(2024). Developing Cultivation Systems and Better Management Practices for Caribbean Tropical Seaweeds in US Waters. In听Tropical Phyconomy Coalition Development听(Vol. 11, pp. 121鈥141). Springer Nature.

Wang, T., Du, B.,听Forbrich, I., Zhou, J., Polen, J., Sunderland, E., Balcom, P., Chen, C., & Obrist, D. (2024). Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA.听Biogeosciences,听21(6), 1461鈥1476.

Grone, J., Poirier, C., Abbott, K.,听Wittmers, F., Jaeger, G. S., Mahadevan, A., &听Worden, A. Z.听(2024). A single听Prochlorococcus听ecotype dominates the tropical Bay of Bengal with ultradian growth.听Environmental Microbiology,听26(3), e16605.

Guti茅rrez-Ib谩帽ez, C., & Wylie, D. R. (2024). Investigation of central pattern generators in the spinal cord of chicken embryos.听Journal of Comparative Physiology A.

McAllister, C. T., &听Remsen, D.听(2024). A New State Record for the Milliped,听Howellaria infesta听(Diplopoda: Polydesmida: Xystodesmidae).听Entomological News,听131(2), 61鈥63.

Mina艡铆k, M., Modrell, M. S.,听Gillis, J. A., Campbell, A. S., Fuller, I., Lyne, R., Micklem, G., Gela, D., P拧eni膷ka, M., & Baker, C. V. H. (2024). Identification of multiple transcription factor genes potentially involved in the development of electrosensory听versus听mechanosensory lateral line organs.听Frontiers in Cell and Developmental Biology,听12.

Sackville, M. A.,听Gillis, J. A., & Brauner, C. J. (2024). The origins of gas exchange and ion regulation in fish gills: Evidence from structure and function.听Journal of Comparative Physiology B.

Deng, H., He, C.,听Worden, A. Z., & Gong, J. (2024). Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments.听Environmental Microbiology,听26(3), e16615.

Diaz Soria, C. L., Attenborough, T., Lu, Z., Fontenla, S., Graham, J., Hall, C., Thompson, S., Andrews, T. G. R.,听Rawlinson, K. A., Berriman, M., & Rinaldi, G. (2024). Single-cell transcriptomics of the human parasite听Schistosoma mansoni听first intra-molluscan stage reveals tentative tegumental and stem-cell regulators.听Scientific Reports,听14, 5974.

Giacomini, J. J., Torres-Morales, J., Tang, J., Dewhirst, F. E., Borisy, G. G., &听Mark Welch, J. L.听(2024). Spatial ecology of听Haemophilus and Aggregatibacter听in the human oral cavity.听Microbiology Spectrum, e04017-23.

MacCord, K., &听Maienschein, J.听(2024). Studying Regeneration Through History as a Way of Looking Forward.听Journal of the History of Biology.

Buresch, K. C., Huget, N. D., Brister, W. C., Zhou, E. Y., Lineaweaver, A. S., Rifai, C., Hu, J., Stevenson, Z. E., Boal, J. G., &听Hanlon, R. T.听(2024). Evidence for tactile 3D shape discrimination by octopus.听Journal of Comparative Physiology A.

Jarriel, S., Formel, N.,听Ferguson,听S., Jensen, F., Apprill, A., & Mooney, T. (2024). Unidentified fish sounds as indicators of coral reef health and comparison to other acoustic methods.听Frontiers in Remote Sensing,听5, 1338586.

McNellis, R., van Gestel, N., Thomas, R. Q., & Smith, N. G. (2024). Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agroecosystem.听Ecosphere,听15(2), e4753.

Fogarty, E. C., Schechter, M. S., Lolans, K., Sheahan, M. L., Veseli, I., Moore, R. M., Kiefl, E., Moody, T., Rice, P. A., Yu, M. K., Mimee, M., Chang, E. B., Ruscheweyh, H.-J., Sunagawa, S., Mclellan, S. L., Willis, A. D., Comstock, L. E., &听Eren, A. M.听(2024). A cryptic plasmid is among the most numerous genetic elements in the human gut.听Cell,听187(5), 1206-1222.e16.

McMaken, C. M., &听Gribble, K. E.听(2024). A free and user-friendly software protocol for the quantification of microfauna swimming behavior.听BioTechniques.

Yu, M., Fogarty, E., &听Eren, A. M.听(2024). Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess.听Nature Microbiology,听9(3), 830鈥847.

Fricke, A., Bast, F.,听Moreira-Saporiti, A., Martins Bussanello, G., Msuya, F. E., &听Teichberg, M.听(2024). Tropical bloom-forming mesoalgae听Cladophoropsis听sp. And听Laurencia听sp.鈥攔esponses to ammonium enrichment and a simulated heatwave.听Journal of Phycology.

Henderson, L. C., Wittmers, F., Carlson, C. A.,听Worden, A. Z., & Close, H. G. (2024). Variable carbon isotope fractionation of photosynthetic communities over depth in an open-ocean euphotic zone.听Proceedings of the National Academy of Sciences of the United States of America,听121(10), e2304613121.

Hill, A., Sch盲fer, K.,听Forbrich, I., & Vargas, R. (2024). Empirical Dynamic Modeling Reveals Complexity of Methane Fluxes in a Temperate Salt Marsh.听Journal of Geophysical Research Biogeosciences,听129(2), e2023JG007630.

Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D.,听Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context.听Biophysical Journal,听123(3), 290a.

MacCord, K.听(2024, February). Sex Cells.听Natural History,听132(2), 30鈥35.

Nakamura, M., Kyoda, T.,听Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y.,听Wlizla, M.,听Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of Inhibin尾A and JunB is essential for cell proliferation in听Xenopus听tadpole tail regeneration.听Scientific Reports,听14, 3679.

Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo.听EvoDevo,听15(1), 3.

Dor茅, H., Eisenberg, A., Junkins, E., Leventhal, G.,听Ganesh, A., Cordero, O.,听Paul, B., Valentine, D., O鈥橫alley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria.听Proceedings of the National Academy of Sciences of the United States of America,听121(9), e2316469121.

Kwiatkowski, E. R.,听Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising.听Trends in Genetics.

Yin, C.,听Morita, T., &听Parrish, J. Z.听(2024). A cell atlas of the larval Aedes aegypti ventral nerve cord.听Neural Development,听19(1), 2.听*Authors from Neurobiology course*

Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L.,听McClelland, J.,听Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma.听Water,听16(2), 316.

Mensinger, A.听(2024). So many toadfish, so little time.听Journal of the Acoustical Society of America,听155(2), 817鈥825.

Costello, J. H.,听Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa听Aurelia aurita.听Bioinspiration & Biomimetics,听19(2), 026005.

Vineis, J. H.,听Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E.,听Fallon, B. R.,听Paul, B. G.,听Morrison, H. G., &听Sogin, M. L.听(2024). A novel conjugative transposon carrying an autonomously amplified plasmid.听mBio, e02787-23.

Valiela, I.,听Lloret, J.,听Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise.听Environmental Challenges, 100842.

You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D.,听Kicklighter, D., Liang, X., Li, X.,听Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution?听Global Change Biology,听30(1), e17109.

Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S.,听Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids.听Journal of Bacteriology, e00426-23.

Bulseco, A. N., Murphy, A. E.,听Giblin, A. E.,听Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction.听Science of The Total Environment, 169681.

Hoffmann, C., &听Milovanovic, D.听(2023). Dipping contacts 鈥 a novel type of contact site at the interface between membraneless organelles and membranes.听Journal of Cell Science,听136(24), jcs261413.

Maienschein, J.听(2023). Everett Mendelsohn at the 小蓝视频.听Journal of the History of Biology.

Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells.听Postepy Biochemii.

Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., &听Maignien, L.听(2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments.听ISME Communications,听3(1), Article 1.

Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., J盲rveoja, J., Hawman, P., Mishra, D., Smith, D., D鈥橝cunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P.,听Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O鈥橦alloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2听Concentration and Ecosystem Fluxes in Some of the World鈥檚 Key Wetland Types.听Wetlands,听44, 1.

Arkhipova, I., &听Yushenova, I.听(2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes.听Biochemistry (Moscow),听88(11), 1754鈥1762.

Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N.,听Abbo, L., Lind茅n, S. K., &听Wikstrom, J. D.听(2023). Mass Spectrometry Analysis of Shark Skin Proteins.听International Journal of Molecular Sciences,听24(23), Article 23.